PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT29238
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family WRKY
Protein Properties Length: 178aa    MW: 18857.6 Da    PI: 10.7276
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT29238genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-3188145359
               -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
               D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp ++++tYegeH+h+
  EMT29238  88 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERALDDPAMLVVTYEGEHRHS 145
               9************************9888****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.9E-154284IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.1E-3274145IPR003657WRKY domain
PROSITE profilePS5081130.12581147IPR003657WRKY domain
SuperFamilySSF1182901.11E-2684145IPR003657WRKY domain
SMARTSM007744.6E-3786146IPR003657WRKY domain
PfamPF031061.2E-2688144IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSGATSVTST SFFSSVTAGE GSVSKGRSLV SAGKPPLSGH KRKPCAGAHS EANTTGSRVH  60
CSKRRKNRVK TTVRVPAVSA KIADIPPDEY SWRKYGQKPI KGSPYPRGYY KCSTVRGCPA  120
RKHVERALDD PAMLVVTYEG EHRHSPGPMP MQMAPSPMPM PMGAPVAVAS VSAGNGHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-2274145272WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8274040.0KR827404.1 Triticum aestivum WRKY53 transcriptional factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580447.11e-90PREDICTED: probable WRKY transcription factor 11
SwissprotQ9SV155e-66WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLA0A0M4CUQ01e-126A0A0M4CUQ0_WHEAT; WRKY53 transcriptional factor
TrEMBLM8C5B51e-127M8C5B5_AEGTA; Putative WRKY transcription factor 11
TrEMBLW5BAX91e-126W5BAX9_WHEAT; Uncharacterized protein
STRINGBRADI5G20700.14e-90(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.14e-52WRKY DNA-binding protein 11